Fee Deep Dive
| Fee Type | PayPal | Stripe |
|---|---|---|
| Standard online rate | 2.99% + $0.49 | 2.9% + $0.30 |
| International surcharge | +1.5% | +1.5% |
| Chargeback fee | $20 | $15 |
| Monthly fee | $0 | $0 |
| Currency conversion | 3-4% | 2% |
| Refund fee | Fixed fee kept on refunds | Fixed fee returned on refunds |
| Payout speed | Instant to PayPal balance; 1-3 days to bank | 2 business days (instant for fee) |
Pricing and fees are current as of March 2026. Check each provider's website for the latest rates.
At $50,000/month volume with $75 average transaction:
- PayPal: 667 transactions × (2.99% + $0.49) = $1,495 + $327 = ~$1,822/month
- Stripe: 667 transactions × (2.9% + $0.30) = $1,450 + $200 = ~$1,650/month
At $50K/month, Stripe saves you ~$172/month ($2,064/year) compared to PayPal — and that gap grows with volume.
Checkout Experience Compared
PayPal's checkout experience includes the PayPal button — which 400M+ users recognize and trust. For many e-commerce stores, adding PayPal as a checkout option can improve conversion rates, since some customers prefer not to enter their card details on unfamiliar sites.
Stripe's checkout experience is more flexible: you can build a fully custom checkout, embed a Stripe form, or use Stripe's hosted checkout page. Developers love this flexibility; non-developers should use Stripe's hosted solution or a Stripe-powered platform like Shopify.
Developer Experience
Stripe wins emphatically. Stripe's documentation, webhook system, and client libraries are considered the industry gold standard. PayPal's API is functional but dated — integration typically takes longer and PayPal's developer experience has historically been more frustrating.
Best for E-commerce
For most e-commerce businesses, our recommendation is use both: Stripe as your primary payment processor (lower fees, better developer experience) and PayPal as an additional checkout option (improves conversion for PayPal-preferring customers). Most major e-commerce platforms (Shopify, WooCommerce, BigCommerce) support both simultaneously.
Best for Subscriptions
Stripe wins for subscriptions. Stripe Billing handles complex subscription logic — free trials, usage-based billing, prorations, dunning — far better than PayPal's subscription APIs. If subscriptions are central to your business model, Stripe is the clear choice.
When to Use Both
Many online businesses run Stripe as their primary gateway and add PayPal as a checkout option. This gives you Stripe's lower fees and developer experience while capturing PayPal-preferring customers. The incremental revenue from improved PayPal conversion often exceeds the operational complexity of managing two processors.
PayPal Pros
- ✓400M+ active accounts — customers already have it
- ✓Highest buyer trust and brand recognition
- ✓Venmo integration for younger demographics
- ✓Pay Later option can increase average order value
- ✓Strong buyer and seller protection policies
PayPal Cons
- ✕Highest fees of the three — 2.99% + $0.49 per transaction
- ✕$20 chargeback fee vs $15 for Stripe
- ✕Account holds and freezes reported with higher frequency
- ✕Older developer experience — integration takes longer
- ✕Checkout experience can feel dated vs modern alternatives
Stripe Pros
- ✓Excellent developer tools and API
- ✓Transparent flat-rate pricing
- ✓Superior recurring billing and subscription management
- ✓135+ supported currencies
- ✓Extensive marketplace and platform tools (Connect)
- ✓Advanced fraud protection with Radar
Stripe Cons
- ✕No built-in POS for in-person sales
- ✕Steeper learning curve for non-technical users
- ✕Account stability concerns for high-risk industries
- ✕Phone support only on custom pricing plans
- ✕Payouts take 2 business days by default
Verdict: Stripe Primary, PayPal as Option
For most online businesses, run Stripe as your primary processor and add PayPal as a checkout option. You get Stripe's lower fees and excellent developer experience while capturing PayPal-preferring customers who might abandon without it.